ClinVar Miner

Variants in gene NRXN1 with conflicting interpretations

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Y axis minimum submission review status: Y axis collection method:
X axis minimum submission review status: X axis collection method:
Minimum conflict level:
Gene type:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission per condition Variants with at least 2 submissions on the same condition and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any conflict
1026 55 0 29 53 1 3 70

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

pathogenic likely pathogenic uncertain significance likely benign benign association drug response protective other
likely pathogenic 1 0 2 0 0 0 0 0 0
uncertain significance 1 3 0 47 20 1 1 1 1
likely benign 0 0 46 0 28 0 0 0 0
benign 0 0 19 28 0 0 0 0 0

All variants with conflicting interpretations #

Total variants: 70
Download table as spreadsheet
NM_001330078.2(NRXN1):c.105C>A (p.Gly35=) rs55640811
NM_001330078.2(NRXN1):c.1158+26A>T rs201802152
NM_001330078.2(NRXN1):c.1285C>T (p.Pro429Ser) rs78540316
NM_001330078.2(NRXN1):c.1320+10G>A rs113028018
NM_001330078.2(NRXN1):c.1326A>C (p.Val442=) rs201485014
NM_001330078.2(NRXN1):c.1365T>C (p.Leu455=) rs201727684
NM_001330078.2(NRXN1):c.1575A>G (p.Arg525=) rs201941844
NM_001330078.2(NRXN1):c.1688T>C (p.Ile563Thr) rs201837579
NM_001330078.2(NRXN1):c.1843C>T (p.Leu615=) rs201029409
NM_001330078.2(NRXN1):c.1945A>G (p.Ile649Val) rs200074974
NM_001330078.2(NRXN1):c.2037G>A (p.Pro679=) rs199714221
NM_001330078.2(NRXN1):c.2122C>A (p.Leu708Ile) rs56086732
NM_001330078.2(NRXN1):c.2193C>T (p.Leu731=) rs201466898
NM_001330078.2(NRXN1):c.222C>T (p.Gly74=) rs201592993
NM_001330078.2(NRXN1):c.2274C>A (p.Thr758=) rs78030925
NM_001330078.2(NRXN1):c.2385C>G (p.Pro795=) rs147984237
NM_001330078.2(NRXN1):c.2421C>T (p.Asn807=) rs115211871
NM_001330078.2(NRXN1):c.2459G>A (p.Ser820Asn) rs80293130
NM_001330078.2(NRXN1):c.2507C>T (p.Ala836Val) rs199557987
NM_001330078.2(NRXN1):c.2533C>T (p.His845Tyr) rs199784139
NM_001330078.2(NRXN1):c.2605C>A (p.Leu869Met) rs201818223
NM_001330078.2(NRXN1):c.2698A>C (p.Arg900=) rs574531814
NM_001330078.2(NRXN1):c.2730G>A (p.Lys910=) rs192909520
NM_001330078.2(NRXN1):c.2772C>T (p.Tyr924=) rs200182626
NM_001330078.2(NRXN1):c.3012G>A (p.Lys1004=) rs201118246
NM_001330078.2(NRXN1):c.3042C>T (p.Thr1014=) rs75137449
NM_001330078.2(NRXN1):c.3045C>T (p.Ala1015=) rs56402642
NM_001330078.2(NRXN1):c.3071-10C>T rs398123573
NM_001330078.2(NRXN1):c.3090A>C (p.Gly1030=) rs201886024
NM_001330078.2(NRXN1):c.3129A>G (p.Val1043=) rs200698497
NM_001330078.2(NRXN1):c.3165A>G (p.Ser1055=) rs1553656447
NM_001330078.2(NRXN1):c.3201C>T (p.Ser1067=) rs75275592
NM_001330078.2(NRXN1):c.3219C>T (p.Asn1073=) rs563089155
NM_001330078.2(NRXN1):c.322C>T (p.Pro108Ser) rs199784029
NM_001330078.2(NRXN1):c.3245-4G>T rs1057520338
NM_001330078.2(NRXN1):c.3249C>T (p.Pro1083=) rs116236999
NM_001330078.2(NRXN1):c.3364+9C>T rs200767650
NM_001330078.2(NRXN1):c.339C>T (p.Ala113=) rs767682431
NM_001330078.2(NRXN1):c.3408G>A (p.Thr1136=) rs80094872
NM_001330078.2(NRXN1):c.3489C>T (p.Ala1163=) rs147580960
NM_001330078.2(NRXN1):c.3499C>T (p.Arg1167Ter) rs199546979
NM_001330078.2(NRXN1):c.3933A>G (p.Ala1311=) rs79970751
NM_001330078.2(NRXN1):c.4004C>T (p.Thr1335Ile) rs200672080
NM_001330078.2(NRXN1):c.4068G>A (p.Thr1356=) rs74714098
NM_001330078.2(NRXN1):c.4167C>G (p.Pro1389=) rs143446587
NM_001330078.2(NRXN1):c.4236C>T (p.Gly1412=) rs587781101
NM_001330078.2(NRXN1):c.4248G>A (p.Pro1416=) rs151195816
NM_001330078.2(NRXN1):c.4254A>G (p.Pro1418=) rs55923848
NM_001330078.2(NRXN1):c.4275G>T (p.Arg1425=) rs143495349
NM_001330078.2(NRXN1):c.4392T>C (p.His1464=) rs112536447
NM_001330078.2(NRXN1):c.4473G>A (p.Ala1491=) rs113380721
NM_001330078.2(NRXN1):c.492C>T (p.Ala164=) rs201180707
NM_001330078.2(NRXN1):c.498G>A (p.Ala166=) rs201212909
NM_001330078.2(NRXN1):c.501C>G (p.Leu167=) rs200248561
NM_001330078.2(NRXN1):c.511C>T (p.Leu171=) rs1045874
NM_001330078.2(NRXN1):c.600C>T (p.Gly200=) rs201481698
NM_001330078.2(NRXN1):c.744C>T (p.Thr248=) rs202043138
NM_001330078.2(NRXN1):c.772+1024C>G rs199645252
NM_001330078.2(NRXN1):c.772+1032G>A rs771759988
NM_001330078.2(NRXN1):c.772+1040A>T rs201741449
NM_001330078.2(NRXN1):c.772+1078A>G rs144049982
NM_001330078.2(NRXN1):c.772+1140G>A rs61658382
NM_001330078.2(NRXN1):c.772+9del rs755130575
NM_001330078.2(NRXN1):c.777C>T (p.Asp259=) rs587780407
NM_001330078.2(NRXN1):c.833-5T>G rs199712573
NM_001330078.2(NRXN1):c.882C>T (p.Tyr294=) rs200464704
NM_001330078.2(NRXN1):c.900C>T (p.Pro300=) rs2303298
NM_138735.4(NRXN1):c.49GGC[11] (p.Gly17[11]) rs750165040
Single allele

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