ClinVar Miner

Variants in gene SIK1 with conflicting interpretations

Y axis minimum submission review status: Y axis collection method:
X axis minimum submission review status: X axis collection method:
Minimum conflict level:
Gene type:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission per condition Variants with at least 2 submissions on the same condition and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any conflict
301 15 0 3 6 0 0 9

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

uncertain significance likely benign benign
uncertain significance 0 5 1
likely benign 5 0 3
benign 1 3 0

All variants with conflicting interpretations #

Total variants: 9
Download table as spreadsheet
NM_173354.5(SIK1):c.1179G>A (p.Pro393=) rs142768400
NM_173354.5(SIK1):c.1215G>A (p.Met405Ile) rs34987632
NM_173354.5(SIK1):c.1457C>T (p.Ala486Val) rs369897512
NM_173354.5(SIK1):c.1934G>A (p.Arg645Gln) rs34614061
NM_173354.5(SIK1):c.2112G>A (p.Ser704=) rs773124142
NM_173354.5(SIK1):c.2243G>A (p.Arg748His) rs375516507
NM_173354.5(SIK1):c.274-3del rs550878772
NM_173354.5(SIK1):c.408C>T (p.Ala136=) rs150770510
NM_173354.5(SIK1):c.951G>T (p.Val317=) rs113514102

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