ClinVar Miner

Variants in gene SNTA1 with conflicting interpretations

Y axis minimum submission review status: Y axis collection method:
X axis minimum submission review status: X axis collection method:
Minimum conflict level:
Gene type:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission per condition Variants with at least 2 submissions on the same condition and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any conflict
212 24 0 5 9 0 2 13

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

pathogenic likely pathogenic uncertain significance likely benign benign
pathogenic 0 0 1 1 0
likely pathogenic 0 0 1 0 0
uncertain significance 1 1 0 8 2
likely benign 1 0 8 0 5
benign 0 0 2 5 0

All variants with conflicting interpretations #

Total variants: 13
Download table as spreadsheet
NM_003098.2(SNTA1):c.1088A>C (p.Glu363Ala) rs147964932
NM_003098.2(SNTA1):c.1426-5T>C rs183939417
NM_003098.2(SNTA1):c.1498C>T (p.Arg500Cys) rs786205426
NM_003098.2(SNTA1):c.221C>T (p.Pro74Leu) rs572545726
NM_003098.2(SNTA1):c.311-20C>T rs200764326
NM_003098.2(SNTA1):c.311-6G>A rs139532210
NM_003098.2(SNTA1):c.440C>A (p.Thr147Asn) rs141724500
NM_003098.2(SNTA1):c.566C>T (p.Ser189Leu) rs144860423
NM_003098.2(SNTA1):c.589C>T (p.Arg197Trp) rs530603992
NM_003098.2(SNTA1):c.677G>A (p.Cys226Tyr) rs34479952
NM_003098.2(SNTA1):c.770C>G (p.Ala257Gly) rs56157422
NM_003098.2(SNTA1):c.784A>C (p.Thr262Pro) rs200316080
NM_003098.2(SNTA1):c.984C>T (p.Pro328=) rs138863915

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