ClinVar Miner

Variants in gene TRAPPC9 with conflicting interpretations

Y axis minimum submission review status: Y axis collection method:
X axis minimum submission review status: X axis collection method:
Minimum conflict level:
Gene type:
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If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission Variants with at least 2 submissions and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any kind of conflict
144 30 0 34 27 1 1 51

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

pathogenic likely pathogenic uncertain significance likely benign benign association drug response
pathogenic 0 1 0 0 0 0 0
likely pathogenic 2 0 1 1 1 1 1
uncertain significance 0 0 0 23 14 0 0
likely benign 0 0 23 0 32 0 0
benign 0 0 14 32 0 0 0

All variants with conflicting interpretations #

Total variants: 51
Download table as spreadsheet
HGVS dbSNP
NM_001160372.4(TRAPPC9):c.1164C>T (p.Tyr388=) rs148976893
NM_001160372.4(TRAPPC9):c.1326G>A (p.Ser442=) rs145960296
NM_001160372.4(TRAPPC9):c.1407C>T (p.Tyr469=) rs117632905
NM_001160372.4(TRAPPC9):c.1414C>T (p.Arg472Ter) rs267607137
NM_001160372.4(TRAPPC9):c.1458C>T (p.Phe486=) rs34179337
NM_001160372.4(TRAPPC9):c.159C>T (p.Leu53=) rs112997540
NM_001160372.4(TRAPPC9):c.1692C>T (p.Asn564=) rs12549048
NM_001160372.4(TRAPPC9):c.1809G>A (p.Leu603=) rs146235874
NM_001160372.4(TRAPPC9):c.1869C>T (p.Ser623=) rs117685875
NM_001160372.4(TRAPPC9):c.198C>T (p.Asn66=) rs142627115
NM_001160372.4(TRAPPC9):c.2037G>A (p.Pro679=) rs371880751
NM_001160372.4(TRAPPC9):c.207T>C (p.Gly69=) rs3735801
NM_001160372.4(TRAPPC9):c.2292C>T (p.Gly764=) rs11166965
NM_001160372.4(TRAPPC9):c.2431+7G>A rs11166964
NM_001160372.4(TRAPPC9):c.2475G>A (p.Arg825=) rs756688439
NM_001160372.4(TRAPPC9):c.263C>T (p.Ser88Leu) rs139631202
NM_001160372.4(TRAPPC9):c.2742C>T (p.Thr914=) rs28710457
NM_001160372.4(TRAPPC9):c.2796C>T (p.Ala932=) rs145607512
NM_001160372.4(TRAPPC9):c.2797G>A (p.Gly933Ser) rs114949291
NM_001160372.4(TRAPPC9):c.2799= (p.Gly933=) rs2614718
NM_001160372.4(TRAPPC9):c.2811-5C>T rs534788967
NM_001160372.4(TRAPPC9):c.288T>C (p.Phe96=) rs3735802
NM_001160372.4(TRAPPC9):c.2988G>A (p.Glu996=) rs142048892
NM_001160372.4(TRAPPC9):c.3012C>T (p.Asn1004=) rs148805943
NM_001160372.4(TRAPPC9):c.3069C>T (p.Asp1023=) rs144383785
NM_001160372.4(TRAPPC9):c.3136C>T (p.Arg1046Trp) rs376617920
NM_001160372.4(TRAPPC9):c.3157C>T (p.Arg1053Cys) rs147499593
NM_001160372.4(TRAPPC9):c.3163G>A (p.Val1055Ile) rs35578974
NM_001160372.4(TRAPPC9):c.3225C>T (p.Tyr1075=) rs58740567
NM_001160372.4(TRAPPC9):c.3241G>A (p.Val1081Ile) rs141067069
NM_001160372.4(TRAPPC9):c.3249C>T (p.Phe1083=) rs112551069
NM_001160372.4(TRAPPC9):c.3279+4C>T rs79877357
NM_001160372.4(TRAPPC9):c.3291C>T (p.Ser1097=) rs148857575
NM_001160372.4(TRAPPC9):c.3356G>A (p.Arg1119Gln) rs145503551
NM_001160372.4(TRAPPC9):c.3390A>C (p.Pro1130=) rs143396124
NM_001160372.4(TRAPPC9):c.3411C>A (p.Pro1137=) rs373979305
NM_001160372.4(TRAPPC9):c.3414T>G (p.Ser1138Arg) rs147127279
NM_001160372.4(TRAPPC9):c.3421G>A (p.Val1141Met) rs140157207
NM_001160372.4(TRAPPC9):c.357G>A (p.Gly119=) rs34457678
NM_001160372.4(TRAPPC9):c.370A>G (p.Ile124Val) rs117688394
NM_001160372.4(TRAPPC9):c.399T>C (p.Ala133=) rs61739560
NM_001160372.4(TRAPPC9):c.411C>T (p.Asn137=) rs3735803
NM_001160372.4(TRAPPC9):c.414C>T (p.Tyr138=) rs115986561
NM_001160372.4(TRAPPC9):c.555G>A (p.Lys185=) rs57593250
NM_001160372.4(TRAPPC9):c.588T>C (p.His196=) rs61736350
NM_031466.7(TRAPPC9):c.160A>G (p.Ser54Gly) rs148523016
NM_031466.7(TRAPPC9):c.166_186dup (p.Gly56_His62dup) rs367682297
NM_031466.7(TRAPPC9):c.187A>G (p.Arg63Gly) rs144686266
NM_031466.7(TRAPPC9):c.222G>C (p.Ala74=) rs767996463
NM_031466.7(TRAPPC9):c.284+10G>A rs117206975
Single allele

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