ClinVar Miner

Variants in gene TRAPPC9 with conflicting interpretations

Y axis minimum submission review status: Y axis collection method:
X axis minimum submission review status: X axis collection method:
Minimum conflict level:
Gene type:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission Variants with at least 2 submissions and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any kind of conflict
135 28 0 18 15 0 0 30

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

uncertain significance likely benign benign
uncertain significance 0 14 4
likely benign 14 0 18
benign 4 18 0

All variants with conflicting interpretations #

Total variants: 30
Download table as spreadsheet
HGVS dbSNP
NM_031466.7(TRAPPC9):c.1458C>T (p.Tyr486=) rs148976893
NM_031466.7(TRAPPC9):c.160A>G (p.Ser54Gly) rs148523016
NM_031466.7(TRAPPC9):c.1701C>T (p.Tyr567=) rs117632905
NM_031466.7(TRAPPC9):c.1752C>T (p.Phe584=) rs34179337
NM_031466.7(TRAPPC9):c.1986C>T (p.Asn662=) rs12549048
NM_031466.7(TRAPPC9):c.2163C>T (p.Ser721=) rs117685875
NM_031466.7(TRAPPC9):c.2586C>T (p.Gly862=) rs11166965
NM_031466.7(TRAPPC9):c.2725+7G>A rs11166964
NM_031466.7(TRAPPC9):c.3090C>T (p.Ala1030=) rs145607512
NM_031466.7(TRAPPC9):c.3091G>A (p.Gly1031Ser) rs114949291
NM_031466.7(TRAPPC9):c.3093T= (p.Gly1031=) rs2614718
NM_031466.7(TRAPPC9):c.3282G>A (p.Glu1094=) rs142048892
NM_031466.7(TRAPPC9):c.3306C>T (p.Asn1102=) rs148805943
NM_031466.7(TRAPPC9):c.3363C>T (p.Asp1121=) rs144383785
NM_031466.7(TRAPPC9):c.3457G>A (p.Val1153Ile) rs35578974
NM_031466.7(TRAPPC9):c.3519C>T (p.Tyr1173=) rs58740567
NM_031466.7(TRAPPC9):c.3543C>T (p.Phe1181=) rs112551069
NM_031466.7(TRAPPC9):c.3573+4C>T rs79877357
NM_031466.7(TRAPPC9):c.3585C>T (p.Ser1195=) rs148857575
NM_031466.7(TRAPPC9):c.3705C>A (p.Pro1235=) rs373979305
NM_031466.7(TRAPPC9):c.3708T>G (p.Ser1236Arg) rs147127279
NM_031466.7(TRAPPC9):c.453C>T (p.Leu151=) rs112997540
NM_031466.7(TRAPPC9):c.501T>C (p.Gly167=) rs3735801
NM_031466.7(TRAPPC9):c.582T>C (p.Phe194=) rs3735802
NM_031466.7(TRAPPC9):c.651G>A (p.Gly217=) rs34457678
NM_031466.7(TRAPPC9):c.693T>C (p.Ala231=) rs61739560
NM_031466.7(TRAPPC9):c.705C>T (p.Asn235=) rs3735803
NM_031466.7(TRAPPC9):c.708C>T (p.Tyr236=) rs115986561
NM_031466.7(TRAPPC9):c.849G>A (p.Lys283=) rs57593250
NM_031466.7(TRAPPC9):c.882T>C (p.His294=) rs61736350

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