ClinVar Miner

Variants in gene VCP with conflicting interpretations

See also:
Y axis minimum submission review status: Y axis collection method:
X axis minimum submission review status: X axis collection method:
Minimum conflict level:
Gene type:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission per condition Variants with at least 2 submissions on the same condition and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any conflict
548 26 0 17 7 0 2 23

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

pathogenic likely pathogenic uncertain significance likely benign benign
pathogenic 0 4 1 0 0
likely pathogenic 4 0 1 0 0
uncertain significance 1 1 0 7 2
likely benign 0 0 7 0 13
benign 0 0 2 13 0

All variants with conflicting interpretations #

Total variants: 23
Download table as spreadsheet
HGVS dbSNP gnomAD frequency
NM_007126.5(VCP):c.18-5T>C rs114256093 0.01353
NM_007126.5(VCP):c.1082-9G>T rs12349922 0.00667
NM_007126.5(VCP):c.1092C>T (p.Asp364=) rs61752947 0.00619
NM_007126.5(VCP):c.1360-14C>G rs144304208 0.00311
NM_007126.5(VCP):c.1704A>G (p.Gln568=) rs142577424 0.00296
NM_007126.5(VCP):c.927C>T (p.Ile309=) rs34097935 0.00270
NM_007126.5(VCP):c.79A>G (p.Ile27Val) rs140913250 0.00151
NM_007126.5(VCP):c.1081+17C>T rs200756991 0.00113
NM_007126.5(VCP):c.1584C>T (p.Ala528=) rs147623367 0.00064
NM_007126.5(VCP):c.*4G>T rs201091341 0.00052
NM_007126.5(VCP):c.1202A>G (p.Asn401Ser) rs148329626 0.00009
NM_007126.5(VCP):c.1875G>T (p.Arg625=) rs201410035 0.00009
NM_007126.5(VCP):c.1194+3G>A rs183223259 0.00008
NM_007126.5(VCP):c.1242G>A (p.Leu414=) rs375262833 0.00004
NM_007126.5(VCP):c.1863C>T (p.Gly621=) rs376510669 0.00002
NM_007126.5(VCP):c.2214A>G (p.Glu738=) rs374391034 0.00002
NM_007126.5(VCP):c.572G>A (p.Arg191Gln) rs121909334 0.00002
NM_007126.5(VCP):c.1460G>A (p.Arg487His) rs767379602 0.00001
NM_007126.5(VCP):c.476G>A (p.Arg159His) rs121909335 0.00001
NM_007126.5(VCP):c.1896C>A (p.Ala632=) rs141275388
NM_007126.5(VCP):c.283C>T (p.Arg95Cys) rs121909332
NM_007126.5(VCP):c.478G>C (p.Ala160Pro) rs1554668805
NM_007126.5(VCP):c.553G>A (p.Glu185Lys) rs864309501

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