If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.
| Variants with only 1 submission per condition | Variants with at least 2 submissions on the same condition and no conflicts |
Variants with a synonymous conflict (e.g. benign vs non-pathogenic) |
Variants with a confidence conflict (e.g. benign vs likely benign) |
Variants with a benign or likely benign vs uncertain conflict |
Variants with a category conflict (e.g. benign vs affects) |
Variants with a clinically significant conflict (e.g. benign vs pathogenic) |
Variants with any conflict |
|---|---|---|---|---|---|---|---|
| 30 | 37 | 0 | 20 | 0 | 1 | 5 | 26 |
Significance breakdown #
In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.
| All submitters | ||||||
|---|---|---|---|---|---|---|
| Department of Pediatrics, |
pathogenic | likely pathogenic | uncertain significance | benign | risk factor | |
| pathogenic | 0 | 16 | 2 | 0 | 1 | |
| likely pathogenic | 4 | 0 | 3 | 1 | 0 | |
Submitter to submitter summary #
Total submitters: 17
| Submitter | Variants with only 1 submission per condition | Variants with at least 2 submissions on the same condition and no conflicts |
Variants with a synonymous conflict (e.g. benign vs non-pathogenic) |
Variants with a confidence conflict (e.g. benign vs likely benign) |
Variants with a benign or likely benign vs uncertain conflict |
Variants with a category conflict (e.g. benign vs affects) |
Variants with a clinically significant conflict (e.g. benign vs pathogenic) |
Variants with any conflict |
|---|---|---|---|---|---|---|---|---|
| Invitae | 0 | 27 | 0 | 3 | 0 | 0 | 3 | 6 |
| Counsyl | 0 | 6 | 0 | 5 | 0 | 0 | 0 | 5 |
| Myriad Genetics, Inc. | 0 | 15 | 0 | 4 | 0 | 0 | 0 | 4 |
| Database of Curated Mutations (DoCM) | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 3 |
| St. Jude Molecular Pathology, St. Jude Children's Research Hospital | 0 | 2 | 0 | 1 | 0 | 0 | 2 | 3 |
| Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine | 0 | 7 | 0 | 2 | 0 | 0 | 0 | 2 |
| Illumina Laboratory Services, Illumina | 0 | 1 | 0 | 1 | 0 | 0 | 1 | 2 |
| OMIM | 0 | 11 | 0 | 0 | 0 | 1 | 0 | 1 |
| Baylor Genetics | 0 | 12 | 0 | 1 | 0 | 0 | 0 | 1 |
| Genetic Diagnostic Laboratory, University of Pennsylvania School of Medicine | 0 | 14 | 0 | 0 | 0 | 0 | 1 | 1 |
| Women's Health and Genetics/Laboratory Corporation of America, LabCorp | 0 | 9 | 0 | 1 | 0 | 0 | 0 | 1 |
| Human Genome Sequencing Center Clinical Lab, Baylor College of Medicine | 0 | 4 | 0 | 1 | 0 | 0 | 0 | 1 |
| Leiden Open Variation Database | 0 | 2 | 0 | 1 | 0 | 0 | 0 | 1 |
| Reproductive Health Research and Development, BGI Genomics | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 |
| Center for Genomic Medicine, King Faisal Specialist Hospital and Research Center | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 1 |
| Neuberg Centre For Genomic Medicine, NCGM | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 |
| Genomics England Pilot Project, Genomics England | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 |
All variants with conflicting interpretations #
Total variants: 26