Variants from Center for Precision Medicine, Meizhou People's Hospital with conflicting interpretations

Minimum review status of the submission from Center for Precision Medicine, Meizhou People's Hospital:	★☆☆☆ criteria provided ★★★☆ reviewed by expert panel ★★★★ practice guideline	Collection method of the submission from Center for Precision Medicine, Meizhou People's Hospital:	clinical testing curation literature only research other
Minimum review status of the other submission:	★☆☆☆ criteria provided ★★★☆ reviewed by expert panel ★★★★ practice guideline	Collection method of the other submission:	clinical testing curation literature only research other
Minimum conflict level: confidence conflict (e.g. benign vs likely benign) benign or likely benign vs uncertain conflict category conflict (e.g. benign vs affects) clinically significant conflict (e.g. benign vs pathogenic) Report conflict between different conditions
Show significances as they were submitted (without aggregation into standard terms)
		ClinVar version: 2025-03-05

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission per condition	Variants with at least 2 submissions on the same condition and no conflicts	Variants with a synonymous conflict (e.g. benign vs non-pathogenic)	Variants with a confidence conflict (e.g. benign vs likely benign)	Variants with a benign or likely benign vs uncertain conflict	Variants with a category conflict (e.g. benign vs affects)	Variants with a clinically significant conflict (e.g. benign vs pathogenic)	Variants with any conflict
142	26	0	5	3	0	1	8

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

	All submitters
Center for Precision Medicine, Meizhou People's Hospital		pathogenic	likely benign	benign
	likely pathogenic	2	0	0
	uncertain significance	1	2	1
	likely benign	0	0	3

Submitter to submitter summary #

Submitter	Variants with only 1 submission per condition	Variants with at least 2 submissions on the same condition and no conflicts	Variants with a synonymous conflict (e.g. benign vs non-pathogenic)	Variants with a confidence conflict (e.g. benign vs likely benign)	Variants with a benign or likely benign vs uncertain conflict	Variants with a category conflict (e.g. benign vs affects)	Variants with a clinically significant conflict (e.g. benign vs pathogenic)	Variants with any conflict
Baylor Genetics	0	22	0	4	1	0	0	5
MGZ Medical Genetics Center	0	1	0	0	2	0	0	2
Genomic Research Center, Shahid Beheshti University of Medical Sciences	0	1	0	0	1	0	0	1
Institute of Human Genetics, University of Leipzig Medical Center	0	4	0	1	0	0	0	1
Department of Medical Laboratory Science, Faculty of Allied Health Sciences, University of Peradeniya	0	1	0	0	0	0	1	1

All variants with conflicting interpretations #

HGVS	dbSNP	gnomAD frequency
NM_007294.4(BRCA1):c.3113A>G (p.Glu1038Gly)	rs16941	0.29115
NM_000059.4(BRCA2):c.10234A>G (p.Ile3412Val)	rs1801426	0.03864
NM_000059.4(BRCA2):c.7469T>C (p.Ile2490Thr)	rs11571707	0.00868
NM_007294.4(BRCA1):c.2566T>C (p.Tyr856His)	rs80356892	0.00046
NM_007294.4(BRCA1):c.3649T>C (p.Ser1217Pro)	rs273900712	0.00008
NM_000059.4(BRCA2):c.5487G>T (p.Leu1829Phe)	rs779967765	0.00001
NM_000059.4(BRCA2):c.8331+1G>A	rs81002837
NM_000059.4(BRCA2):c.8954-5A>G	rs886040949