ClinVar Miner

Variants in gene STK11 with conflicting interpretations

See also:
Y axis minimum submission review status: Y axis collection method:
X axis minimum submission review status: X axis collection method:
Minimum conflict level:
Gene type:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission per condition Variants with at least 2 submissions on the same condition and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic) 		Variants with a confidence conflict
(e.g. benign vs likely benign) 		Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects) 		Variants with a clinically significant conflict
(e.g. benign vs pathogenic) 		Variants with any conflict
1654 413 0 101 143 0 10 222

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

pathogenic likely pathogenic uncertain significance likely benign benign
pathogenic 0 11 3 0 0
likely pathogenic 11 0 8 0 0
uncertain significance 3 8 0 138 27
likely benign 0 0 138 0 90
benign 0 0 27 90 0

All variants with conflicting interpretations #

Total variants: 222
Download table as spreadsheet
HGVS dbSNP gnomAD frequency
NM_000455.5(STK11):c.920+7G>C rs2075607 0.16357
NM_000455.5(STK11):c.816C>T (p.Tyr272=) rs9282859 0.02603
NM_000455.5(STK11):c.264C>A (p.Ile88=) rs56354945 0.02303
NM_000455.5(STK11):c.369G>A (p.Gln123=) rs140112347 0.00636
NM_000455.5(STK11):c.464+9G>A rs376313955 0.00208
NM_000455.5(STK11):c.598-8C>T rs373610101 0.00123
NM_000455.5(STK11):c.894C>A (p.Phe298Leu) rs199681533 0.00100
NM_000455.5(STK11):c.*16+10G>A rs587781180 0.00077
NM_000455.5(STK11):c.597+14del rs536282050 0.00067
NM_000455.5(STK11):c.945G>A (p.Pro315=) rs376329042 0.00060
NM_000455.5(STK11):c.426C>T (p.Ser142=) rs758448869 0.00053
NM_000455.5(STK11):c.1211C>T (p.Ser404Phe) rs200078204 0.00051
NM_000455.5(STK11):c.1185A>G (p.Thr395=) rs370207155 0.00047
NM_000455.5(STK11):c.1284G>A (p.Ser428=) rs369097329 0.00035
NM_000455.5(STK11):c.*8C>T rs587782259 0.00027
NM_000455.5(STK11):c.-137C>T rs527710714 0.00027
NM_000455.5(STK11):c.1194G>A (p.Ala398=) rs184271025 0.00023
NM_000455.5(STK11):c.1296G>A (p.Gln432=) rs587781179 0.00020
NM_000455.5(STK11):c.618G>A (p.Ala206=) rs370976710 0.00018
NM_000455.5(STK11):c.597+8C>T rs565387911 0.00017
NM_000455.5(STK11):c.-461G>A rs552610464 0.00016
NM_000455.5(STK11):c.920+12C>T rs186518799 0.00014
NM_000455.5(STK11):c.825G>A (p.Pro275=) rs202011521 0.00011
NM_000455.5(STK11):c.900C>T (p.Ile300=) rs546089394 0.00011
NM_000455.5(STK11):c.787T>C (p.Leu263=) rs372378119 0.00010
NM_000455.5(STK11):c.735-9G>A rs201899557 0.00009
NM_000455.5(STK11):c.598-7G>A rs377502057 0.00008
NM_000455.5(STK11):c.920+5G>A rs587780013 0.00008
NM_000455.5(STK11):c.-2G>T rs774072752 0.00007
NM_000455.5(STK11):c.1127A>C (p.Glu376Ala) rs373888280 0.00007
NM_000455.5(STK11):c.357C>T (p.Asn119=) rs372511774 0.00007
NM_000455.5(STK11):c.734+20G>A rs375315233 0.00007
NM_000455.5(STK11):c.863-16G>A rs373096204 0.00007
NM_000455.5(STK11):c.*16+12C>T rs730881966 0.00006
NM_000455.5(STK11):c.1257C>T (p.Ser419=) rs375328708 0.00006
NM_000455.5(STK11):c.125G>T (p.Arg42Leu) rs148830698 0.00006
NM_000455.5(STK11):c.734+17C>G rs751929304 0.00006
NM_000455.5(STK11):c.842C>T (p.Pro281Leu) rs121913322 0.00006
NM_000455.5(STK11):c.921-10G>A rs183406870 0.00006
NM_000455.5(STK11):c.1254C>G (p.Cys418Trp) rs587780715 0.00005
NM_000455.5(STK11):c.1286C>G (p.Ala429Gly) rs757369900 0.00005
NM_000455.5(STK11):c.237C>T (p.Ile79=) rs751859508 0.00005
NM_000455.5(STK11):c.366G>A (p.Lys122=) rs376969448 0.00005
NM_000455.5(STK11):c.375-7G>A rs587781176 0.00005
NM_000455.5(STK11):c.465-18G>T rs587781177 0.00005
NM_000455.5(STK11):c.465-5C>T rs567202367 0.00005
NM_000455.5(STK11):c.666C>T (p.Pro222=) rs542189325 0.00005
NM_000455.5(STK11):c.678C>T (p.Asn226=) rs748832988 0.00005
NM_000455.5(STK11):c.920+6C>T rs730881964 0.00005
NM_000455.5(STK11):c.970C>G (p.Pro324Ala) rs549474196 0.00005
NM_000455.5(STK11):c.1109-3C>T rs864622219 0.00004
NM_000455.5(STK11):c.1109-5C>T rs587782020 0.00004
NM_000455.5(STK11):c.1200G>A (p.Leu400=) rs368661707 0.00004
NM_000455.5(STK11):c.298C>G (p.Gln100Glu) rs757841535 0.00004
NM_000455.5(STK11):c.355A>G (p.Asn119Asp) rs545015076 0.00004
NM_000455.5(STK11):c.374+11C>T rs368923696 0.00004
NM_000455.5(STK11):c.42G>A (p.Glu14=) rs758769888 0.00004
NM_000455.5(STK11):c.432G>A (p.Pro144=) rs376788924 0.00004
NM_000455.5(STK11):c.612C>T (p.Phe204=) rs774100153 0.00004
NM_000455.5(STK11):c.613G>A (p.Ala205Thr) rs730881981 0.00004
NM_000455.5(STK11):c.631C>T (p.Arg211Trp) rs185087320 0.00004
NM_000455.5(STK11):c.651G>A (p.Pro217=) rs368348370 0.00004
NM_000455.5(STK11):c.723T>C (p.Ala241=) rs533550278 0.00004
NM_000455.5(STK11):c.795G>A (p.Glu265=) rs730881963 0.00004
NM_000455.5(STK11):c.827G>T (p.Gly276Val) rs749927908 0.00004
NM_000455.5(STK11):c.1118C>T (p.Pro373Leu) rs876661153 0.00003
NM_000455.5(STK11):c.1130C>T (p.Ala377Val) rs199973552 0.00003
NM_000455.5(STK11):c.1168G>C (p.Val390Leu) rs374078532 0.00003
NM_000455.5(STK11):c.1193C>T (p.Ala398Val) rs768058962 0.00003
NM_000455.5(STK11):c.1226G>A (p.Arg409Gln) rs587782364 0.00003
NM_000455.5(STK11):c.1258G>T (p.Ala420Ser) rs762482152 0.00003
NM_000455.5(STK11):c.374+9T>A rs762297795 0.00003
NM_000455.5(STK11):c.464+10C>T rs587782445 0.00003
NM_000455.5(STK11):c.552C>T (p.Leu184=) rs587780719 0.00003
NM_000455.5(STK11):c.566C>T (p.Thr189Ile) rs587781515 0.00003
NM_000455.5(STK11):c.57G>C (p.Ser19=) rs748698151 0.00003
NM_000455.5(STK11):c.615G>A (p.Ala205=) rs532889728 0.00003
NM_000455.5(STK11):c.876C>T (p.Tyr292=) rs148928808 0.00003
NM_000455.5(STK11):c.-9G>A rs770466669 0.00002
NM_000455.5(STK11):c.1109-13G>A rs568152768 0.00002
NM_000455.5(STK11):c.1109-14C>T rs780434041 0.00002
NM_000455.5(STK11):c.1168G>A (p.Val390Met) rs374078532 0.00002
NM_000455.5(STK11):c.1229C>T (p.Ala410Val) rs372329880 0.00002
NM_000455.5(STK11):c.439C>T (p.Arg147Cys) rs748464757 0.00002
NM_000455.5(STK11):c.464+5G>A rs587781681 0.00002
NM_000455.5(STK11):c.608C>T (p.Pro203Leu) rs587782379 0.00002
NM_000455.5(STK11):c.735C>G (p.Leu245=) rs773147894 0.00002
NM_000455.5(STK11):c.828C>T (p.Gly276=) rs200824447 0.00002
NM_000455.5(STK11):c.944C>T (p.Pro315Leu) rs766958608 0.00002
NM_000455.5(STK11):c.-1C>T rs759284466 0.00001
NM_000455.5(STK11):c.1109-4C>T rs1407794756 0.00001
NM_000455.5(STK11):c.1128G>A (p.Glu376=) rs747018506 0.00001
NM_000455.5(STK11):c.1129G>A (p.Ala377Thr) rs768870802 0.00001
NM_000455.5(STK11):c.1137C>T (p.His379=) rs786201505 0.00001
NM_000455.5(STK11):c.1139A>G (p.Asn380Ser) rs1247102370 0.00001
NM_000455.5(STK11):c.1145A>G (p.Gln382Arg) rs985937027 0.00001
NM_000455.5(STK11):c.1147C>T (p.Arg383Cys) rs535449626 0.00001
NM_000455.5(STK11):c.1150C>T (p.Arg384Trp) rs752015385 0.00001
NM_000455.5(STK11):c.1153G>A (p.Gly385Ser) rs763586612 0.00001
NM_000455.5(STK11):c.1167C>G (p.Ala389=) rs547919101 0.00001
NM_000455.5(STK11):c.1174A>G (p.Met392Val) rs565993396 0.00001
NM_000455.5(STK11):c.1182C>T (p.Gly394=) rs376679847 0.00001
NM_000455.5(STK11):c.1189G>T (p.Ala397Ser) rs587780008 0.00001
NM_000455.5(STK11):c.1190C>T (p.Ala397Val) rs558040549 0.00001
NM_000455.5(STK11):c.1217C>T (p.Ala406Val) rs748202003 0.00001
NM_000455.5(STK11):c.1222G>A (p.Gly408Ser) rs749463771 0.00001
NM_000455.5(STK11):c.1231C>G (p.Pro411Ala) rs772527201 0.00001
NM_000455.5(STK11):c.1245C>T (p.Arg415=) rs878853985 0.00001
NM_000455.5(STK11):c.1247A>G (p.Lys416Arg) rs1446554442 0.00001
NM_000455.5(STK11):c.1251C>T (p.Ala417=) rs1060503786 0.00001
NM_000455.5(STK11):c.1252T>A (p.Cys418Ser) rs730881991 0.00001
NM_000455.5(STK11):c.1259C>T (p.Ala420Val) rs369033659 0.00001
NM_000455.5(STK11):c.291-13C>T rs1332978515 0.00001
NM_000455.5(STK11):c.317G>A (p.Arg106Gln) rs375622587 0.00001
NM_000455.5(STK11):c.318G>A (p.Arg106=) rs777784520 0.00001
NM_000455.5(STK11):c.434A>G (p.Glu145Gly) rs369764220 0.00001
NM_000455.5(STK11):c.447A>G (p.Pro149=) rs587780718 0.00001
NM_000455.5(STK11):c.449T>C (p.Val150Ala) rs587781802 0.00001
NM_000455.5(STK11):c.45C>T (p.Gly15=) rs786201234 0.00001
NM_000455.5(STK11):c.464+4C>T rs373167735 0.00001
NM_000455.5(STK11):c.464+8C>T rs863224669 0.00001
NM_000455.5(STK11):c.465-10C>G rs1060503780 0.00001
NM_000455.5(STK11):c.465-8G>A rs878853990 0.00001
NM_000455.5(STK11):c.559G>A (p.Gly187Ser) rs587782032 0.00001
NM_000455.5(STK11):c.579C>T (p.Ser193=) rs730881961 0.00001
NM_000455.5(STK11):c.594C>T (p.Ala198=) rs772940660 0.00001
NM_000455.5(STK11):c.621C>T (p.Asp207=) rs569380138 0.00001
NM_000455.5(STK11):c.632G>A (p.Arg211Gln) rs730881982 0.00001
NM_000455.5(STK11):c.71C>T (p.Thr24Met) rs770503805 0.00001
NM_000455.5(STK11):c.720G>A (p.Ser240=) rs759743897 0.00001
NM_000455.5(STK11):c.750G>A (p.Thr250=) rs748112446 0.00001
NM_000455.5(STK11):c.765C>T (p.Phe255=) rs769912677 0.00001
NM_000455.5(STK11):c.841C>A (p.Pro281Thr) rs377208033 0.00001
NM_000455.5(STK11):c.846C>G (p.Leu282=) rs777872290 0.00001
NM_000455.5(STK11):c.863-4T>C rs778853572 0.00001
NM_000455.5(STK11):c.863-6C>T rs757276643 0.00001
NM_000455.5(STK11):c.877G>A (p.Glu293Lys) rs398123405 0.00001
NM_000455.5(STK11):c.882G>A (p.Pro294=) rs587781178 0.00001
NM_000455.5(STK11):c.902G>A (p.Arg301Gln) rs370222210 0.00001
NM_000455.5(STK11):c.921-8G>A rs863224362 0.00001
NM_000455.5(STK11):c.921-9C>T rs761688641 0.00001
NM_000455.5(STK11):c.957A>G (p.Pro319=) rs755126393 0.00001
NM_000455.5(STK11):c.971C>T (p.Pro324Leu) rs367807476 0.00001
NM_000455.5(STK11):c.972G>A (p.Pro324=) rs553474397 0.00001
NM_000455.5(STK11):c.976C>A (p.Pro326Thr) rs771632414 0.00001
NM_000455.5(STK11):c.-107dup rs927999961
NM_000455.5(STK11):c.1109-4C>A rs1407794756
NM_000455.5(STK11):c.1129G>C (p.Ala377Pro) rs768870802
NM_000455.5(STK11):c.120C>T (p.Arg40=) rs878853984
NM_000455.5(STK11):c.1225C>G (p.Arg409Gly) rs368466538
NM_000455.5(STK11):c.1225C>T (p.Arg409Trp) rs368466538
NM_000455.5(STK11):c.1230C>T (p.Ala410=) rs864622171
NM_000455.5(STK11):c.1236C>T (p.Asn412=) rs1158714606
NM_000455.5(STK11):c.1244G>A (p.Arg415His) rs775978755
NM_000455.5(STK11):c.1261_1262inv (p.Ser421Leu)
NM_000455.5(STK11):c.1276C>G (p.Arg426Gly) rs587782687
NM_000455.5(STK11):c.1283C>G (p.Ser428Trp) rs587781537
NM_000455.5(STK11):c.141dup (p.Lys48fs) rs2145405118
NM_000455.5(STK11):c.163C>T (p.Leu55=) rs1057520869
NM_000455.5(STK11):c.169dup (p.Glu57fs) rs121913319
NM_000455.5(STK11):c.189G>A (p.Val63=) rs1342321548
NM_000455.5(STK11):c.200T>C (p.Leu67Pro) rs137853077
NM_000455.5(STK11):c.248A>G (p.Lys83Arg) rs374006397
NM_000455.5(STK11):c.318G>T (p.Arg106=) rs777784520
NM_000455.5(STK11):c.323A>G (p.Lys108Arg) rs1057520040
NM_000455.5(STK11):c.329T>A (p.Val110Asp) rs2145420687
NM_000455.5(STK11):c.345T>C (p.Asp115=) rs2145420737
NM_000455.5(STK11):c.374+2T>C rs1555737480
NM_000455.5(STK11):c.375-5C>T rs1057517626
NM_000455.5(STK11):c.397G>A (p.Val133Met) rs567769257
NM_000455.5(STK11):c.399G>A (p.Val133=) rs757021648
NM_000455.5(STK11):c.407T>C (p.Met136Thr) rs1060499958
NM_000455.5(STK11):c.418_420del (p.Leu140del) rs1599925362
NM_000455.5(STK11):c.440G>A (p.Arg147His) rs587780717
NM_000455.5(STK11):c.464+14G>A rs587782421
NM_000455.5(STK11):c.464+15C>T rs1057521355
NM_000455.5(STK11):c.464+20del rs730881960
NM_000455.5(STK11):c.464+32CGGGGGC[3] rs58579265
NM_000455.5(STK11):c.464+3G>A rs1060499956
NM_000455.5(STK11):c.464+44dup rs544282452
NM_000455.5(STK11):c.464G>A (p.Gly155Glu) rs1555737830
NM_000455.5(STK11):c.465-4G>A rs587780009
NM_000455.5(STK11):c.489C>T (p.Gly163=) rs1060499959
NM_000455.5(STK11):c.526G>A (p.Asp176Asn) rs730881979
NM_000455.5(STK11):c.537G>A (p.Pro179=) rs528535500
NM_000455.5(STK11):c.542A>G (p.Asn181Ser) rs886037859
NM_000455.5(STK11):c.543C>G (p.Asn181Lys) rs730881973
NM_000455.5(STK11):c.558C>T (p.Thr186=) rs749563734
NM_000455.5(STK11):c.564C>T (p.Gly188=) rs786201344
NM_000455.5(STK11):c.579C>A (p.Ser193=) rs730881961
NM_000455.5(STK11):c.580G>A (p.Asp194Asn) rs121913315
NM_000455.5(STK11):c.597+21dup rs534445875
NM_000455.5(STK11):c.598-11C>T rs587782431
NM_000455.5(STK11):c.617C>T (p.Ala206Val) rs764244639
NM_000455.5(STK11):c.618G>C (p.Ala206=) rs370976710
NM_000455.5(STK11):c.693C>T (p.Phe231=) rs1568708275
NM_000455.5(STK11):c.69C>T (p.Asp23=) rs1599914867
NM_000455.5(STK11):c.717G>C (p.Trp239Cys) rs137853082
NM_000455.5(STK11):c.734+19dup rs730881962
NM_000455.5(STK11):c.735-10C>T rs553975112
NM_000455.5(STK11):c.735-16_735-15del rs775965325
NM_000455.5(STK11):c.735-6_735-2del rs759090799
NM_000455.5(STK11):c.737ACA[1] (p.Asn247del)
NM_000455.5(STK11):c.747C>T (p.Thr249=) rs759546076
NM_000455.5(STK11):c.840C>T (p.Pro280=) rs1471868090
NM_000455.5(STK11):c.842C>A (p.Pro281Gln) rs121913322
NM_000455.5(STK11):c.854T>C (p.Leu285Pro) rs1555738724
NM_000455.5(STK11):c.863-14C>G rs756001994
NM_000455.5(STK11):c.863-3C>T rs1599928254
NM_000455.5(STK11):c.863-5C>T rs1599928248
NM_000455.5(STK11):c.863-5_863-3del rs764739106
NM_000455.5(STK11):c.864G>A (p.Gly288=) rs2080787350
NM_000455.5(STK11):c.869T>C (p.Leu290Pro) rs1057524439
NM_000455.5(STK11):c.894C>G (p.Phe298Leu) rs199681533
NM_000455.5(STK11):c.910C>T (p.Arg304Trp) rs786201090
NM_000455.5(STK11):c.920+1G>A rs1131690920
NM_000455.5(STK11):c.920+7G>A rs2075607
NM_000455.5(STK11):c.920+7_920+8delinsCA rs1057517545
NM_000455.5(STK11):c.923G>A (p.Trp308Ter) rs864622488
NM_000455.5(STK11):c.940C>T (p.Pro314Ser) rs758416485
NM_000455.5(STK11):c.942T>C (p.Pro314=) rs1256260277
NM_000455.5(STK11):c.96C>G (p.Thr32=) rs79175212

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